IL_12CI_005
3D structure
- PDB id
- 12CI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dopamine-binding aptamer, DGR-1A, in complex with dopamine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.59 Å
Loop
- Sequence
- CGUAAUU*AGUCAG
- Length
- 13 nucleotides
- Bulged bases
- 12CI|1|B|U|16, 12CI|1|B|U|19, 12CI|1|B|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11879.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
12CI|1|B|C|14
12CI|1|B|G|15
12CI|1|B|U|16
12CI|1|B|A|17
12CI|1|B|A|18
12CI|1|B|U|19
12CI|1|B|U|20
*
12CI|1|B|A|39
12CI|1|B|G|40
12CI|1|B|U|41
12CI|1|B|C|42
12CI|1|B|A|43
12CI|1|B|G|44
Current chains
- Chain B
- DGR-1A aptamer
Nearby chains
- Chain A
- DGR-1A aptamer
Coloring options: