Motif IL_11879.1 Version IL_11879.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_12CI_005 | 12CI | 0.0000 | 3 | B | DGR-1A aptamer | C | 14 | G | 15 | A | 17 | A | 18 | U | 20 | * | A | 39 | G | 40 | C | 42 | A | 43 | G | 44 | ncSs | cWW | cWW |
| 2 | IL_12CJ_003 | 12CJ | 0.2327 | 3 | B | DGR-1B | C | 12 | G | 13 | A | 15 | A | 16 | U | 18 | * | A | 37 | G | 38 | A | 40 | A | 41 | G | 42 | ncSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAUU*AGUCAG | 1 |
| CGUAAUU*AGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAU*GUCA | 1 |
| GUAAU*GUAA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.23 | Avg 0.12 | Max 0.23
Coloring options: