IL_12DP_033
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_033 not in the Motif Atlas
- Homologous match to IL_8B0X_098
- Geometric discrepancy: 0.1576
- The information below is about IL_8B0X_098
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.2
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
12DP|1|1A|C|1004
12DP|1|1A|C|1005
12DP|1|1A|C|1006
12DP|1|1A|C|1007
12DP|1|1A|C|1008
12DP|1|1A|A|1009
12DP|1|1A|A|1010
12DP|1|1A|G|1011
*
12DP|1|1A|C|1150
12DP|1|1A|G|1151
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
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