IL_12DP_039

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

12DP|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_039 not in the Motif Atlas

Homologous match to IL_1MMS_004

Geometric discrepancy: 0.2394

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

12DP|1|1A|G|1087
12DP|1|1A|A|1088
12DP|1|1A|G|1089
12DP|1|1A|U|1090
12DP|1|1A|G|1091
*
12DP|1|1A|C|1100
12DP|1|1A|U|1101
12DP|1|1A|C|1102

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36