IL_12DP_066

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

12DP|1|1A|G|1801, 12DP|1|1A|G|1816, 12DP|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_066 not in the Motif Atlas

Homologous match to IL_8B0X_132

Geometric discrepancy: 0.1166

The information below is about IL_8B0X_132

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

12DP|1|1A|U|1798
12DP|1|1A|G|1799
12DP|1|1A|C|1800
12DP|1|1A|G|1801
12DP|1|1A|A|1802
12DP|1|1A|A|1803
12DP|1|1A|C|1804
*
12DP|1|1A|G|1813
12DP|1|1A|G|1814
12DP|1|1A|A|1815
12DP|1|1A|G|1816
12DP|1|1A|G|1817
12DP|1|1A|U|1818
12DP|1|1A|A|1819
12DP|1|1A|U|1820
12DP|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA