IL_8B0X_132

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8B0X|1|a|A|1803, 8B0X|1|a|C|1818, 8B0X|1|a|U|1822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0392

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8B0X|1|a|U|1800
8B0X|1|a|G|1801
8B0X|1|a|C|1802
8B0X|1|a|A|1803
8B0X|1|a|A|1804
8B0X|1|a|A|1805
8B0X|1|a|C|1806
*
8B0X|1|a|G|1815
8B0X|1|a|G|1816
8B0X|1|a|A|1817
8B0X|1|a|C|1818
8B0X|1|a|G|1819
8B0X|1|a|U|1820
8B0X|1|a|A|1821
8B0X|1|a|U|1822
8B0X|1|a|A|1823

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2