IL_12DP_073
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 12DP|1|1A|A|1938, 12DP|1|1A|U|1944, 12DP|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_073 not in the Motif Atlas
- Homologous match to IL_8B0X_138
- Geometric discrepancy: 0.2842
- The information below is about IL_8B0X_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.4
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
12DP|1|1A|C|1934
12DP|1|1A|G|1935
12DP|1|1A|A|1936
12DP|1|1A|A|1937
12DP|1|1A|A|1938
12DP|1|1A|5MU|1939
12DP|1|1A|U|1940
12DP|1|1A|C|1941
12DP|1|1A|5MC|1942
12DP|1|1A|U|1943
12DP|1|1A|U|1944
12DP|1|1A|G|1945
*
12DP|1|1A|C|1961
12DP|1|1A|5MC|1962
12DP|1|1A|U|1963
12DP|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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