IL_8B0X_138
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8B0X|1|a|A|1942, 8B0X|1|a|U|1948, 8B0X|1|a|U|1967
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B0X_138 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.0942
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8B0X|1|a|C|1938
8B0X|1|a|G|1939
8B0X|1|a|A|1940
8B0X|1|a|A|1941
8B0X|1|a|A|1942
8B0X|1|a|5MU|1943
8B0X|1|a|U|1944
8B0X|1|a|C|1945
8B0X|1|a|C|1946
8B0X|1|a|U|1947
8B0X|1|a|U|1948
8B0X|1|a|G|1949
*
8B0X|1|a|C|1965
8B0X|1|a|5MC|1966
8B0X|1|a|U|1967
8B0X|1|a|G|1968
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: