IL_12DP_103

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

12DP|1|1A|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_103 not in the Motif Atlas

Homologous match to IL_8B0X_168

Geometric discrepancy: 0.1348

The information below is about IL_8B0X_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

12DP|1|1A|G|2838
12DP|1|1A|G|2839
*
12DP|1|1A|U|2878
12DP|1|1A|C|2879
12DP|1|1A|C|2880

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17