IL_12DP_110
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_110 not in the Motif Atlas
- Homologous match to IL_8B0X_175
- Geometric discrepancy: 0.0765
- The information below is about IL_8B0X_175
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
12DP|1|1B|C|71
12DP|1|1B|G|72
12DP|1|1B|A|73
12DP|1|1B|U|74
12DP|1|1B|G|75
12DP|1|1B|G|76
12DP|1|1B|U|77
12DP|1|1B|A|78
12DP|1|1B|C|79
*
12DP|1|1B|G|98
12DP|1|1B|G|99
12DP|1|1B|A|100
12DP|1|1B|G|101
12DP|1|1B|A|102
12DP|1|1B|G|103
12DP|1|1B|U|104
12DP|1|1B|A|105
12DP|1|1B|G|106
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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