Motif IL_71138.1 Version IL_71138.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-16 | 4-15 | 6-13 | 7-12 | 8-11 | 9-10 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_106 | 7A0S | 0.1046 | 0 | Bacterial 5S Loop E | Y | 5S rRNA | C | 73 | A | 74 | A | 75 | U | 76 | G | 77 | A | 78 | U | 79 | A | 80 | C | 81 | * | G | 100 | A | 101 | A | 102 | A | 103 | A | 104 | G | 105 | U | 106 | C | 107 | G | 108 | cWW | tSH | tHW | ncBW | cWB | tWH | tHS | cWW |
| 2 | IL_9DFE_114 | 9DFE | 0.0000 | 0 | Bacterial 5S Loop E | 1B | 5S rRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | C | 79 | * | G | 98 | G | 99 | A | 100 | G | 101 | A | 102 | G | 103 | U | 104 | A | 105 | G | 106 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW |
| 3 | IL_8B0X_175 | 8B0X | 0.0739 | 0 | Bacterial 5S Loop E (H) | b | 5S rRNA | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | cBW | cWB | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAUAC*GAAAAGUCG | 1 |
| CGAUGGUAC*GGAGAGUAG | 1 |
| CGAUGGUAG*CGAGAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGGUA*GAGAGUA | 2 |
| AAUGAUA*AAAAGUC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Bacterial 5S Loop E (2)
- Bacterial 5S Loop E (H) (1)
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.06 | Max 0.11
Coloring options: