IL_12DP_253

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_253 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.423

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

12DP|1|2A|G|2110
12DP|1|2A|C|2111
12DP|1|2A|G|2112
12DP|1|2A|U|2113
12DP|1|2A|A|2114
12DP|1|2A|G|2115
12DP|1|2A|G|2116
12DP|1|2A|A|2117
12DP|1|2A|U|2118
12DP|1|2A|A|2119
12DP|1|2A|G|2120
*
12DP|1|2A|C|2178
12DP|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains