IL_12DP_255

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

12DP|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_255 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4233

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

12DP|1|2A|C|2129
12DP|1|2A|U|2130
12DP|1|2A|G|2131
12DP|1|2A|U|2132
12DP|1|2A|G|2133
12DP|1|2A|A|2134
12DP|1|2A|A|2135
12DP|1|2A|C|2136
*
12DP|1|2A|G|2155
12DP|1|2A|G|2156
12DP|1|2A|G|2157
12DP|1|2A|A|2158
12DP|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains