IL_12DP_303

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

12DP|1|2a|A|532, 12DP|1|2a|U|534, 12DP|1|2a|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_303 not in the Motif Atlas

Homologous match to IL_8B0X_024

Geometric discrepancy: 0.1698

The information below is about IL_8B0X_024

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|G|515
12DP|1|2a|PSU|516
12DP|1|2a|G|517
12DP|1|2a|C|518
12DP|1|2a|C|519
12DP|1|2a|A|520
12DP|1|2a|G|521
*
12DP|1|2a|C|528
12DP|1|2a|G|529
12DP|1|2a|G|530
12DP|1|2a|U|531
12DP|1|2a|A|532
12DP|1|2a|A|533
12DP|1|2a|U|534
12DP|1|2a|A|535
12DP|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12