IL_12DP_329

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

12DP|1|2a|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_329 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.146

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

12DP|1|2a|C|1158
12DP|1|2a|U|1159
12DP|1|2a|G|1160
12DP|1|2a|C|1161
*
12DP|1|2a|G|1175
12DP|1|2a|A|1176
12DP|1|2a|G|1177
12DP|1|2a|G|1178
12DP|1|2a|A|1179
12DP|1|2a|A|1180
12DP|1|2a|G|1181

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9