IL_12DQ_024
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 12DQ|1|1A|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_024 not in the Motif Atlas
- Geometric match to IL_9DFE_024
- Geometric discrepancy: 0.0705
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
12DQ|1|1A|C|844
12DQ|1|1A|G|845
12DQ|1|1A|C|846
12DQ|1|1A|U|847
12DQ|1|1A|G|848
12DQ|1|1A|A|849
12DQ|1|1A|C|850
*
12DQ|1|1A|G|927
12DQ|1|1A|G|928
12DQ|1|1A|U|930
12DQ|1|1A|G|931
12DQ|1|1A|G|932
12DQ|1|1A|A|933
12DQ|1|1A|G|934
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
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