IL_9DFE_024

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

9DFE|1|1A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9DFE|1|1A|C|844
9DFE|1|1A|G|845
9DFE|1|1A|C|846
9DFE|1|1A|U|847
9DFE|1|1A|G|848
9DFE|1|1A|A|849
9DFE|1|1A|C|850
*
9DFE|1|1A|G|927
9DFE|1|1A|G|928
9DFE|1|1A|U|930
9DFE|1|1A|G|931
9DFE|1|1A|G|932
9DFE|1|1A|A|933
9DFE|1|1A|G|934

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30