IL_12DQ_081

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

12DQ|1|1A|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_081 not in the Motif Atlas

Homologous match to IL_8B0X_143

Geometric discrepancy: 0.0872

The information below is about IL_8B0X_143

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

12DQ|1|1A|G|2070
12DQ|1|1A|A|2071
*
12DQ|1|1A|U|2438
12DQ|1|1A|A|2439
12DQ|1|1A|C|2440
12DQ|1|1A|C|2441

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1v

P-site Peptidyl-tRNA Analog Peptide

Chain 1x

P-site Peptidyl-tRNA Analog RNA