IL_12DQ_095

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_095 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.176

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

12DQ|1|1A|C|2466
12DQ|1|1A|C|2467
12DQ|1|1A|G|2468
12DQ|1|1A|A|2469
12DQ|1|1A|G|2470
*
12DQ|1|1A|C|2480
12DQ|1|1A|G|2481
12DQ|1|1A|G|2482
12DQ|1|1A|C|2483
12DQ|1|1A|G|2484

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25