IL_12DQ_129

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_129 not in the Motif Atlas

Homologous match to IL_8B0X_017

Geometric discrepancy: 0.1216

The information below is about IL_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26900.4

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

7

Unit IDs

12DQ|1|1a|G|371
12DQ|1|1a|C|372
12DQ|1|1a|A|373
12DQ|1|1a|A|374
12DQ|1|1a|U|375
*
12DQ|1|1a|A|389
12DQ|1|1a|C|390

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16