IL_12DQ_151

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

12DQ|1|1a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_151 not in the Motif Atlas

Homologous match to IL_8B0X_040

Geometric discrepancy: 0.1437

The information below is about IL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

12DQ|1|1a|G|933
12DQ|1|1a|C|934
12DQ|1|1a|A|935
*
12DQ|1|1a|U|1380
12DQ|1|1a|U|1381
12DQ|1|1a|C|1382
12DQ|1|1a|C|1383
12DQ|1|1a|C|1384

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1y

Ribosome-associated inhibitor A