IL_12DQ_156
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 12DQ|1|1a|C|1200, 12DQ|1|1a|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_156 not in the Motif Atlas
- Homologous match to IL_8B0X_047
- Geometric discrepancy: 0.1188
- The information below is about IL_8B0X_047
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_26092.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
12DQ|1|1a|G|1057
12DQ|1|1a|G|1058
*
12DQ|1|1a|U|1199
12DQ|1|1a|C|1200
12DQ|1|1a|A|1201
12DQ|1|1a|G|1202
12DQ|1|1a|C|1203
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1y
- Ribosome-associated inhibitor A
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