RNA 3D Hub //

Motif IL_26092.1 Version IL_26092.1 of this group appears in releases 4.14 to 4.14

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-21-52-53-4
1 IL_3RW6_0033RW60.50311Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU38A40U41*A20G21cWWtHScWW
2 IL_8GLP_0338GLP0.32101Minor groove platformL5 LSU rRNAU512U514C515*G646G647cWWtHScWW
3 IL_9H3G_1429H3G0.49191Minor groove platformA LSU rRNAU3368U3370G3371*C3311G3312cWWtHScWW
4 IL_8B0X_0478B0X0.48412Minor groove platformA SSU rRNAU1199U1202C1203*G1057G1058cWWtHScWW
5 IL_4LFB_0454LFB0.48702Minor groove platformA SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
6 IL_9PN5_2089PN50.58392Minor groove platformB5 SSU rRNAU1430G1433U1434*G1277G1278cWWtHScWWa
7 IL_9SUM_2059SUM0.58242Minor groove platform (H)CA SSU rRNAU1406G1409U1410*G1247G1248cWWtHScWWa
8 IL_8GLP_0178GLP0.50301Minor groove platformL5+L8 LSU rRNA + 5.8S rRNAC339G341G342*C32G33cWWcWW
9 IL_9DFE_0739DFE0.42081Minor groove platform1A LSU rRNAG1846A1848G1849*C1893C1894cWWncWScWW
10 IL_8CRE_4198CRE0.27550Minor groove platformCM SSU rRNAU531A532A533*U515A516cWWtHSncWW
11 IL_9PN5_1699PN50.21500Minor groove platformB5 SSU rRNAU533A534A535*U517A518cWWtHSncWW
12 IL_9H3G_1839H3G0.21100Minor groove platformh1 SSU rRNAU535A536A537*U519A520cWWtHSncWW
13 IL_4UYK_0014UYK0.23700Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
14 IL_4LFB_0544LFB0.17520Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
15 IL_4LFB_0044LFB0.07340Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
16 IL_8B0X_0048B0X0.07340Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
17 IL_9PN5_1469PN50.06280Minor groove platformB5 SSU rRNAC50A51U52*A428G429cWWtHScWW
18 IL_9SUM_1419SUM0.04340Minor groove platform (H)CA SSU rRNAC50A51U52*A417G418cWWtHScWW
19 IL_9H3G_1599H3G0.00000Minor groove platformh1 SSU rRNAC50A51U52*A430G431cWWtHScWW
20 IL_8GLP_1928GLP0.06540Minor groove platformS2 SSU rRNAC49A50U51*A476G477cWWtHScWW
21 IL_8CRE_3948CRE0.07880Minor groove platformCM SSU rRNAC50A51U52*A426G427cWWtHScWW
22 IL_9SUM_2089SUM0.25820CA SSU rRNAC1276U1277G1278*C1287G1288cSWcWWcWW
23 IL_8GLP_2008GLP0.25140Minor groove platformS2 SSU rRNAA339C340C341*G123U124cWWcWW
24 IL_8GLP_2468GLP0.24070Minor groove platformS2 SSU rRNAG1108C1109G1110*C1123C1124cWWntHScWW
25 IL_9PN5_1709PN50.26030Minor groove platformB5 SSU rRNAA518C519A520*U532U533cWWntHScWW
26 IL_9H3G_1849H3G0.27090Minor groove platformh1 SSU rRNAA520C521A522*U534U535cWWntHScWW
27 IL_9SUM_1649SUM0.29330Minor groove platform (H)CA SSU rRNAA507C508A509*U521U522cWWntWScWW
28 IL_8CRE_4208CRE0.27950Minor groove platformCM SSU rRNAA516C517A518*U530U531cWWcWW
29 IL_9DFE_0319DFE0.33750Minor groove platform1A LSU rRNAU877A878G879*C898A899cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAU*AG7
ACA*UU4
UAA*UA3
UCUGU*GG2
CAC*GG2
UAAU*AG1
UUUC*GG1
UUUG*CG1
UCAUC*GG1
UCAGC*GG1
CCGG*CG1
GAAG*CC1
CUG*CG1
ACC*GU1
GCG*CC1
UAG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
A*13
C*6
AA*2
UU*2
CUG*2
CAU*1
CAG*1
CG*1
U*1

Release history

Release4.14
Date2026-09-09
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (25)
  • Minor groove platform (H) (3)
  • (1)
    • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.04 | Avg 0.39 | Max 0.93
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