IL_12DQ_158
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_158 not in the Motif Atlas
- Homologous match to IL_8B0X_049
- Geometric discrepancy: 0.1008
- The information below is about IL_8B0X_049
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_81485.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 32
Unit IDs
12DQ|1|1a|G|1061
12DQ|1|1a|U|1062
12DQ|1|1a|C|1063
*
12DQ|1|1a|G|1193
12DQ|1|1a|U|1194
12DQ|1|1a|C|1195
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1e
- 30S ribosomal protein S5
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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