IL_12DQ_190

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

12DQ|1|2A|G|801, 12DQ|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_190 not in the Motif Atlas

Homologous match to IL_8B0X_080

Geometric discrepancy: 0.088

The information below is about IL_8B0X_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.4

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

12

Unit IDs

12DQ|1|2A|G|674
12DQ|1|2A|A|675
12DQ|1|2A|A|676
12DQ|1|2A|A|677
12DQ|1|2A|C|678
*
12DQ|1|2A|G|799
12DQ|1|2A|A|800
12DQ|1|2A|G|801
12DQ|1|2A|A|802
12DQ|1|2A|U|803
12DQ|1|2A|A|804
12DQ|1|2A|G|805
12DQ|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15