IL_8B0X_080

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8B0X|1|a|G|803, 8B0X|1|a|G|807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_080 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.051

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8B0X|1|a|G|676
8B0X|1|a|A|677
8B0X|1|a|A|678
8B0X|1|a|A|679
8B0X|1|a|C|680
*
8B0X|1|a|G|801
8B0X|1|a|A|802
8B0X|1|a|G|803
8B0X|1|a|A|804
8B0X|1|a|U|805
8B0X|1|a|A|806
8B0X|1|a|G|807
8B0X|1|a|C|808

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15