IL_12DQ_198

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

12DQ|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_198 not in the Motif Atlas

Geometric match to IL_9DFE_024

Geometric discrepancy: 0.081

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

12DQ|1|2A|C|844
12DQ|1|2A|G|845
12DQ|1|2A|C|846
12DQ|1|2A|U|847
12DQ|1|2A|G|848
12DQ|1|2A|A|849
12DQ|1|2A|C|850
*
12DQ|1|2A|G|927
12DQ|1|2A|G|928
12DQ|1|2A|U|930
12DQ|1|2A|G|931
12DQ|1|2A|G|932
12DQ|1|2A|A|933
12DQ|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30