IL_12DQ_226

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

12DQ|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_226 not in the Motif Atlas

Homologous match to IL_8B0X_114

Geometric discrepancy: 0.2209

The information below is about IL_8B0X_114

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

12DQ|1|2A|C|1417
12DQ|1|2A|G|1418
12DQ|1|2A|A|1419
12DQ|1|2A|U|1420
12DQ|1|2A|G|1421
*
12DQ|1|2A|C|1577
12DQ|1|2A|U|1578
12DQ|1|2A|A|1579
12DQ|1|2A|A|1580
12DQ|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains