IL_12DQ_227

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

12DQ|1|2A|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_227 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.4811

The information below is about IL_7A0S_052

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_75737.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

12DQ|1|2A|U|1433
12DQ|1|2A|A|1434
12DQ|1|2A|G|1435
*
12DQ|1|2A|C|1557
12DQ|1|2A|A|1558
12DQ|1|2A|G|1559
12DQ|1|2A|G|1560

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains