IL_12DQ_240

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

12DQ|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_240 not in the Motif Atlas

Homologous match to IL_8B0X_127

Geometric discrepancy: 0.0713

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

12DQ|1|2A|C|1686
12DQ|1|2A|G|1687
12DQ|1|2A|U|1688
12DQ|1|2A|A|1689
12DQ|1|2A|A|1690
12DQ|1|2A|C|1691
*
12DQ|1|2A|G|1696
12DQ|1|2A|G|1697
12DQ|1|2A|A|1698
12DQ|1|2A|G|1699
12DQ|1|2A|A|1700
12DQ|1|2A|A|1701
12DQ|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA