Motif IL_20700.4 Version IL_20700.4 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	4-9	5-8	6-7
1	IL_4WF9_066	4WF9	0.1526	1	tSH-tSH-tHH-tHS	X	LSU rRNA	C	1730	G	1731	U	1732	A	1733	A	1734	C	1735	*	G	1740	G	1741	A	1742	A	1744	A	1745	G	1746	cWW	ntSH	tHH	tHS	cWW
2	IL_7A0S_063	7A0S	0.1128	1	tSH-tSH-tHH-tHS	X	LSU rRNA	C	1703	G	1704	U	1705	A	1706	A	1707	C	1708	*	G	1713	A	1714	A	1715	A	1717	A	1718	G	1719	cWW	tSH	tHH	tHS	cWW
3	IL_8B0X_127	8B0X	0.1032	1		a	LSU rRNA	C	1688	G	1689	U	1690	A	1691	A	1692	C	1693	*	G	1698	G	1699	A	1700	A	1702	A	1703	G	1704	cWW	tSH	tHH	tHS	cWW
4	IL_9DFE_068	9DFE	0.0970	1		1A	LSU rRNA	C	1686	G	1687	U	1688	A	1689	A	1690	C	1691	*	G	1696	G	1697	A	1698	A	1700	A	1701	G	1702	cWW	tSH	tHH	tHS	cWW
5	IL_9SUM_073	9SUM	0.0737	1		A	LSU rRNA	C	1860	G	1861	U	1862	A	1863	A	1864	C	1865	*	G	1870	G	1871	A	1872	A	1874	A	1875	G	1876	cWW	tSH	tHH	tHS	cWW
6	IL_8GLP_108	8GLP	0.0462	1		L5	LSU rRNA	C	2867	G	2868	U	2869	A	2870	A	2871	C	2872	*	G	2877	G	2878	A	2879	A	2881	A	2882	G	2883	cWW	tSH	tHH	tHS	cWW
7	IL_9H3G_088	9H3G	0.0502	1		A	LSU rRNA	C	1920	G	1921	U	1922	A	1923	A	1924	C	1925	*	G	1930	G	1931	A	1932	A	1934	A	1935	G	1936	cWW	tSH	tHH	tHS	cWW
8	IL_9AXU_075	9AXU	0.0437	1		2	LSU rRNA	C	1973	G	1974	U	1975	A	1976	A	1977	C	1978	*	G	1983	G	1984	A	1985	A	1987	A	1988	G	1989	cWW	tSH	tHH	tHS	cWW
9	IL_9PN5_077	9PN5	0.0000	1		A1	LSU rRNA	C	1918	G	1919	U	1920	A	1921	A	1922	C	1923	*	G	1928	G	1929	A	1930	A	1932	A	1933	G	1934	cWW	tSH	tHH	tHS	cWW
10	IL_4V9F_063	4V9F	0.0542	1	tSH-tSH-tHH-tHS	0	LSU rRNA	C	1764	G	1765	U	1766	A	1767	C	1768	C	1769	*	G	1774	A	1775	A	1776	A	1778	A	1779	G	1780	cWW	tSH	tHH	tHS	cWW
11	IL_8OI5_081	8OI5	0.0619	1		1	LSU rRNA	C	1914	G	1915	U	1916	A	1917	A	1918	C	1919	*	G	1924	G	1925	A	1926	A	1928	A	1929	G	1930	cWW	tSH	tHH	tHS	cWW
12	IL_9E6Q_066	9E6Q	0.0796	1	tSH-tSH-tHH-tHS (H)	1	LSU rRNA	C	1830	G	1831	U	1832	A	1833	A	1834	C	1835	*	G	1840	G	1841	A	1842	A	1844	A	1845	G	1846	cWW	tSH	tHH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAAC*GGAUAAG	5
CGUAAC*GGAGAAG	4
CGUAAC*GAAGAAG	1
CGUAAC*GGAAAAG	1
CGUACC*GAAGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA*GAUAA	5
GUAA*GAGAA	4
GUAA*AAGAA	1
GUAA*GAAAA	1
GUAC*AAGAA	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
tSH-tSH-tHH-tHS (3)
tSH-tSH-tHH-tHS (H) (1)
Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW
Heat map statistics: Min 0.04 | Avg 0.09 | Max 0.18

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Coloring options: Nucleotide numbers

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