IL_12DQ_247

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_247 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2737

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

12DQ|1|2A|G|1856
12DQ|1|2A|G|1857
12DQ|1|2A|G|1858
12DQ|1|2A|A|1859
12DQ|1|2A|G|1860
*
12DQ|1|2A|C|1882
12DQ|1|2A|G|1883
12DQ|1|2A|A|1884
12DQ|1|2A|A|1885
12DQ|1|2A|C|1886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28