IL_12DQ_258

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_258 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2764

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

12DQ|1|2A|G|2124
12DQ|1|2A|G|2125
12DQ|1|2A|A|2126
12DQ|1|2A|G|2127
*
12DQ|1|2A|C|2161
12DQ|1|2A|G|2162
12DQ|1|2A|C|2163
12DQ|1|2A|C|2164
12DQ|1|2A|G|2165
12DQ|1|2A|G|2166
12DQ|1|2A|U|2167
12DQ|1|2A|G|2168
12DQ|1|2A|A|2169
12DQ|1|2A|A|2170
12DQ|1|2A|A|2171
12DQ|1|2A|U|2172
12DQ|1|2A|A|2173
12DQ|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains