IL_12DQ_259

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

12DQ|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_259 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5381

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

12DQ|1|2A|C|2129
12DQ|1|2A|U|2130
12DQ|1|2A|G|2131
12DQ|1|2A|U|2132
12DQ|1|2A|G|2133
12DQ|1|2A|A|2134
12DQ|1|2A|A|2135
12DQ|1|2A|C|2136
*
12DQ|1|2A|G|2155
12DQ|1|2A|G|2156
12DQ|1|2A|G|2157
12DQ|1|2A|A|2158
12DQ|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains