IL_12DQ_274
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_274 not in the Motif Atlas
- Homologous match to IL_8B0X_161
- Geometric discrepancy: 0.0999
- The information below is about IL_8B0X_161
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
12DQ|1|2A|C|2652
12DQ|1|2A|U|2653
12DQ|1|2A|A|2654
12DQ|1|2A|G|2655
12DQ|1|2A|U|2656
12DQ|1|2A|A|2657
12DQ|1|2A|C|2658
*
12DQ|1|2A|G|2663
12DQ|1|2A|G|2664
12DQ|1|2A|A|2665
12DQ|1|2A|C|2666
12DQ|1|2A|C|2667
12DQ|1|2A|G|2668
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2H
- 50S ribosomal protein L6
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