IL_8B0X_161

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_161 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0544

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8B0X|1|a|C|2656
8B0X|1|a|U|2657
8B0X|1|a|A|2658
8B0X|1|a|G|2659
8B0X|1|a|U|2660
8B0X|1|a|A|2661
8B0X|1|a|C|2662
*
8B0X|1|a|G|2667
8B0X|1|a|G|2668
8B0X|1|a|A|2669
8B0X|1|a|C|2670
8B0X|1|a|C|2671
8B0X|1|a|G|2672

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6