IL_12DQ_283
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DQ_283 not in the Motif Atlas
- Homologous match to IL_8B0X_172
- Geometric discrepancy: 0.1444
- The information below is about IL_8B0X_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
12DQ|1|2B|G|23
12DQ|1|2B|G|24
12DQ|1|2B|A|25
12DQ|1|2B|A|26
12DQ|1|2B|C|27
12DQ|1|2B|C|28
*
12DQ|1|2B|G|56
12DQ|1|2B|A|57
12DQ|1|2B|A|58
12DQ|1|2B|A|59
12DQ|1|2B|C|60
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
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