IL_12DQ_286

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_286 not in the Motif Atlas

Homologous match to IL_8B0X_175

Geometric discrepancy: 0.0928

The information below is about IL_8B0X_175

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_71138.1

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

12DQ|1|2B|C|71
12DQ|1|2B|G|72
12DQ|1|2B|A|73
12DQ|1|2B|U|74
12DQ|1|2B|G|75
12DQ|1|2B|G|76
12DQ|1|2B|U|77
12DQ|1|2B|A|78
12DQ|1|2B|C|79
*
12DQ|1|2B|G|98
12DQ|1|2B|G|99
12DQ|1|2B|A|100
12DQ|1|2B|G|101
12DQ|1|2B|A|102
12DQ|1|2B|G|103
12DQ|1|2B|U|104
12DQ|1|2B|A|105
12DQ|1|2B|G|106

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25