IL_12DQ_295

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

12DQ|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_295 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.0918

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_29461.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

2

Unit IDs

12DQ|1|2a|G|148
12DQ|1|2a|A|149
12DQ|1|2a|C|150
12DQ|1|2a|A|151
12DQ|1|2a|A|152
12DQ|1|2a|C|153
*
12DQ|1|2a|G|168
12DQ|1|2a|C|169
12DQ|1|2a|U|170
12DQ|1|2a|A|171
12DQ|1|2a|A|172
12DQ|1|2a|U|173
12DQ|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20