IL_12DQ_306

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_306 not in the Motif Atlas

Homologous match to IL_8B0X_023

Geometric discrepancy: 0.1303

The information below is about IL_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

12DQ|1|2a|C|504
12DQ|1|2a|G|505
12DQ|1|2a|G|506
12DQ|1|2a|C|507
12DQ|1|2a|C|508
12DQ|1|2a|A|509
12DQ|1|2a|A|510
12DQ|1|2a|C|511
*
12DQ|1|2a|G|540
12DQ|1|2a|G|541

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12