Motif IL_11411.4 Version IL_11411.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_076 | 8GLP | 0.1264 | 0 | L5 | LSU rRNA | C | 1911 | G | 1912 | C | 1913 | C | 1914 | C | 1915 | G | 1916 | A | 1917 | U | 1918 | * | G | 2064 | G | 2065 | cWW | cWW | ||
| 2 | IL_9DFE_036 | 9DFE | 0.1160 | 0 | SSU/LSU pseudoknot | 1A | LSU rRNA | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW |
| 3 | IL_4V9F_038 | 4V9F | 0.1091 | 0 | SSU/LSU pseudoknot | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW |
| 4 | IL_9E6Q_043 | 9E6Q | 0.1324 | 0 | SSU/LSU pseudoknot (H) | 1 | LSU rRNA | C | 1124 | C | 1125 | C | 1126 | C | 1127 | C | 1128 | A | 1129 | A | 1130 | G | 1131 | * | C | 1276 | G | 1277 | cWW | cSH | cWW |
| 5 | IL_9SUM_047 | 9SUM | 0.1004 | 0 | A | LSU rRNA | U | 1120 | G | 1121 | C | 1122 | C | 1123 | G | 1124 | G | 1125 | A | 1126 | A | 1127 | * | U | 1272 | A | 1273 | cWW | nchH | cWW | |
| 6 | IL_8OI5_052 | 8OI5 | 0.1094 | 0 | SSU/LSU pseudoknot (H) | 1 | LSU rRNA | U | 1169 | G | 1170 | C | 1171 | C | 1172 | G | 1173 | G | 1174 | A | 1175 | A | 1176 | * | U | 1321 | A | 1322 | cWW | nchH | cWW |
| 7 | IL_9H3G_055 | 9H3G | 0.0000 | 0 | A | LSU rRNA | U | 1182 | G | 1183 | C | 1184 | C | 1185 | C | 1186 | A | 1187 | A | 1188 | C | 1189 | * | G | 1335 | A | 1336 | cWW | cSH | cWW | |
| 8 | IL_8B0X_023 | 8B0X | 0.1459 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | cWW |
| 9 | IL_4LFB_020 | 4LFB | 0.1805 | 0 | SSU/LSU pseudoknot | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | cWW |
| 10 | IL_9SUM_165 | 9SUM | 0.1833 | 0 | CA | SSU rRNA | A | 539 | G | 540 | G | 541 | G | 542 | C | 543 | A | 544 | A | 545 | G | 546 | * | C | 576 | U | 577 | cWW | cSH | cWW | |
| 11 | IL_9PN5_171 | 9PN5 | 0.1968 | 0 | B5 | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | ncSH | cWW | |
| 12 | IL_9H3G_185 | 9H3G | 0.2062 | 0 | h1 | SSU rRNA | A | 552 | G | 553 | G | 554 | G | 555 | C | 556 | A | 557 | A | 558 | G | 559 | * | C | 589 | U | 590 | cWW | cSH | cWW | |
| 13 | IL_8GLP_221 | 8GLP | 0.1891 | 0 | SSU/LSU pseudoknot (H) | S2 | SSU rRNA | A | 599 | G | 600 | OMG | 601 | G | 602 | C | 603 | A | 604 | A | 605 | G | 606 | * | C | 636 | U | 637 | cWW | cSH | cWW |
| 14 | IL_8CRE_421 | 8CRE | 0.1908 | 0 | SSU/LSU pseudoknot | CM | SSU rRNA | A | 548 | G | 549 | G | 550 | G | 551 | C | 552 | A | 553 | A | 554 | G | 555 | * | C | 585 | U | 586 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGCAAG*CU | 4 |
| CCCCCAAG*CG | 2 |
| UGCCGGAA*UA | 2 |
| CGCCCGAU*GG | 1 |
| UCCCCAAG*CA | 1 |
| UGCCCAAC*GA | 1 |
| CGGCUAAC*GG | 1 |
| CGGCCAAC*GG | 1 |
| AGGCAAG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGCAA* | 4 |
| CCCCAA* | 3 |
| GCCGGA* | 2 |
| GCCCGA* | 1 |
| GCCCAA* | 1 |
| GGCUAA* | 1 |
| GGCCAA* | 1 |
| G(OMG)GCAA* | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- SSU/LSU pseudoknot (4)
- SSU/LSU pseudoknot (H) (4)
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Heat map statistics
- Min 0.05 | Avg 0.16 | Max 0.28
Coloring options: