IL_12DQ_339

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

12DQ|1|2a|5MC|1400, 12DQ|1|2a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DQ_339 not in the Motif Atlas

Homologous match to IL_8B0X_057

Geometric discrepancy: 0.1077

The information below is about IL_8B0X_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

12DQ|1|2a|C|1399
12DQ|1|2a|5MC|1400
12DQ|1|2a|G|1401
*
12DQ|1|2a|C|1501
12DQ|1|2a|A|1502
12DQ|1|2a|A|1503
12DQ|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2y

Ribosome-associated inhibitor A