IL_165D_001

3D structure

PDB id

165D (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE

Experimental method

X-RAY DIFFRACTION

Resolution

1.55 Å

Loop

Sequence

UUCG*UUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90721.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

165D|1|A|U|3
165D|1|A|U|4
165D|1|A|C|5
165D|1|A|G|6
*
165D|1|B|U|12
165D|1|B|U|13
165D|1|B|C|14
165D|1|B|G|15

Current chains

Chain A

DNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3')

Chain B

DNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3')

Nearby chains