IL_1A3M_028

3D structure

PDB id

1A3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1A3M_028 not in the Motif Atlas

Geometric match to IL_5J7L_006

Geometric discrepancy: 0.3662

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

1A3M|14|A|C|6
1A3M|14|A|A|7
1A3M|14|A|C|8
*
1A3M|14|B|G|19
1A3M|14|B|A|20
1A3M|14|B|A|21
1A3M|14|B|G|22

Current chains

Chain A

16S RRNA (5'-R(*GP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*UP*UP*C)-3')

Chain B

16S RRNA (5'-R(*GP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*C)-3')

Nearby chains