IL_1A51_009

3D structure

PDB id

1A51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1A51_009 not in the Motif Atlas

Geometric match to IL_1FEU_001

Geometric discrepancy: 0.3188

The information below is about IL_1FEU_001

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1A51|9|A|C|71
1A51|9|A|G|72
1A51|9|A|A|73
1A51|9|A|U|74
1A51|9|A|G|75
1A51|9|A|G|76
1A51|9|A|U|77
1A51|9|A|A|78
1A51|9|A|G|79
*
1A51|9|A|C|97
1A51|9|A|G|98
1A51|9|A|A|99
1A51|9|A|G|100
1A51|9|A|A|101
1A51|9|A|G|102
1A51|9|A|U|103
1A51|9|A|A|104
1A51|9|A|G|105

Current chains

Chain A

5S RRNA LOOP D/LOOP E

Nearby chains