IL_1AQO_006

3D structure

PDB id

1AQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1AQO_006 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.2844

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

1AQO|3|A|G|6
1AQO|3|A|C|7
1AQO|3|A|U|8
*
1AQO|3|A|A|23
1AQO|3|A|C|24

Current chains

Chain A

IRON RESPONSIVE ELEMENT RNA HAIRPIN

Nearby chains