1AQO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1AQO_001 | 1/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_1AQO_016 | 2/A/11:20 | No text annotation | ||
| HL_1AQO_002 | 2/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_1AQO_003 | 3/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_1AQO_004 | 4/A/13:17 | No text annotation | ||
| HL_1AQO_005 | 5/A/13:17 | No text annotation | geometric HL_7KI3_001 HL_75660.8 | |
| HL_1AQO_006 | 6/A/13:17 | No text annotation | geometric HL_4WF9_003 HL_75660.8 | |
| HL_1AQO_007 | 7/A/13:17 | No text annotation | ||
| HL_1AQO_008 | 8/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.8 | |
| HL_1AQO_009 | 9/A/13:17 | No text annotation | geometric HL_2Y9H_003 HL_75660.8 | |
| HL_1AQO_010 | 10/A/13:17 | No text annotation | geometric HL_6DTD_001 HL_89167.2 | |
| HL_1AQO_011 | 11/A/13:17 | No text annotation | geometric HL_4V9F_003 HL_75660.8 | |
| HL_1AQO_012 | 12/A/13:17 | No text annotation | geometric HL_7KI3_001 HL_75660.8 | |
| HL_1AQO_013 | 13/A/13:17 | No text annotation | geometric HL_7A0S_011 HL_75660.8 | |
| HL_1AQO_014 | 14/A/13:17 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_1AQO_015 | 15/A/13:17 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1AQO_043 | 1/A/6:9, 1/A/22:24 | No text annotation | ||
| IL_1AQO_002 | 1/A/12:13, 1/A/17:19 | No text annotation | ||
| IL_1AQO_044 | 2/A/5:8, 2/A/23:25 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.4 | |
| IL_1AQO_004 | 2/A/11:13, 2/A/17:20 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_1AQO_006 | 3/A/6:8, 3/A/23:24 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_1AQO_007 | 3/A/12:13, 3/A/17:19 | No text annotation | ||
| IL_1AQO_045 | 4/A/5:9, 4/A/22:25 | No text annotation | ||
| IL_1AQO_009 | 4/A/12:13, 4/A/17:19 | No text annotation | ||
| IL_1AQO_011 | 5/A/6:8, 5/A/23:24 | No text annotation | ||
| IL_1AQO_012 | 5/A/12:13, 5/A/17:19 | No text annotation | ||
| IL_1AQO_014 | 6/A/6:8, 6/A/23:24 | No text annotation | ||
| IL_1AQO_015 | 6/A/12:13, 6/A/17:19 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_1AQO_017 | 7/A/6:8, 7/A/23:24 | No text annotation | ||
| IL_1AQO_018 | 7/A/12:13, 7/A/17:19 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_1AQO_020 | 8/A/6:8, 8/A/23:24 | No text annotation | ||
| IL_1AQO_021 | 8/A/12:13, 8/A/17:19 | No text annotation | ||
| IL_1AQO_023 | 9/A/6:11, 9/A/20:24 | No text annotation | ||
| IL_1AQO_024 | 9/A/12:13, 9/A/17:19 | Single bulged C | geometric IL_1KUQ_002 IL_05642.3 | |
| IL_1AQO_046 | 10/A/5:8, 10/A/23:25 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_1AQO_026 | 10/A/11:13, 10/A/17:20 | Isolated non-canonical cWW pair | geometric IL_5J7L_363 NA | |
| IL_1AQO_047 | 11/A/6:8, 11/A/23:24 | No text annotation | ||
| IL_1AQO_028 | 11/A/12:13, 11/A/17:19 | No text annotation | ||
| IL_1AQO_030 | 12/A/6:8, 12/A/23:24 | No text annotation | ||
| IL_1AQO_031 | 12/A/12:13, 12/A/17:19 | No text annotation | ||
| IL_1AQO_032 | 13/A/6:8, 13/A/23:24 | Multiple bulged bases | geometric IL_4YAZ_008 IL_71421.3 | |
| IL_1AQO_034 | 13/A/12:13, 13/A/17:19 | No text annotation | ||
| IL_1AQO_036 | 14/A/6:8, 14/A/23:24 | Multiple bulged bases | geometric IL_4V9F_021 IL_71421.3 | |
| IL_1AQO_037 | 14/A/12:13, 14/A/17:19 | No text annotation | ||
| IL_1AQO_039 | 15/A/6:8, 15/A/23:24 | Major groove platform | geometric IL_4OQU_002 IL_48076.8 | |
| IL_1AQO_041 | 15/A/12:13, 15/A/17:19 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1AQO_001 | No text annotation | ||
| IL_1AQO_003 | Triple non-canonical cWW pairs | ||
| IL_1AQO_005 | Isolated non-canonical cWW pair | ||
| IL_1AQO_008 | No text annotation | ||
| IL_1AQO_010 | Isolated non-canonical cWW pair | ||
| IL_1AQO_013 | Isolated non-canonical cWW pair | ||
| IL_1AQO_016 | Isolated non-canonical cWW pair | ||
| IL_1AQO_019 | Isolated non-canonical cWW pair | ||
| IL_1AQO_022 | Isolated non-canonical cWW pair | ||
| IL_1AQO_025 | No text annotation | ||
| IL_1AQO_027 | Isolated non-canonical cWW pair | ||
| IL_1AQO_029 | Isolated non-canonical cWW pair | ||
| IL_1AQO_033 | Isolated non-canonical cWW pair | ||
| IL_1AQO_035 | Isolated non-canonical cWW pair | ||
| IL_1AQO_042 | No text annotation | ||
| IL_1AQO_038 | Isolated non-canonical cWW pair | ||
| IL_1AQO_040 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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