IL_1BN0_003

3D structure

PDB id

1BN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1BN0_003 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1977

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1BN0|4|A|G|2
1BN0|4|A|A|3
1BN0|4|A|C|4
*
1BN0|4|A|G|17
1BN0|4|A|U|18
1BN0|4|A|C|19

Current chains

Chain A

SL3 RNA HAIRPIN

Nearby chains