RNA 3D Hub //

Motif IL_01003.5 Version IL_01003.5 of this group appears in releases 4.7 to 4.7

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-43-5
1 IL_9H3G_2259H3G0.47801h1 SSU rRNAC1340G1342C1343*G1386A1387G1388cWWcWWcWW
2 IL_8P9A_4448P9A0.48491Isolated non-canonical cWW pairsR SSU rRNAC1339A1341C1342*G1383A1384G1385cWWncWwcWW
3 IL_1XJR_0031XJR0.38881Isolated non-canonical cWW pairA s2m RNAC16A17C18*G32G34G35cWWcWWcWW
4 IL_6WBR_0016WBR0.40800Isolated non-canonical cWW pairBRNA (94-MER)U41A42C43*G26G27A28cWWcWW
5 IL_5T3K_0015T3K0.39691Isolated non-canonical cWW pairB+ARNA (16-mer)C26A27C28*G7A8G10cWWcWwcWW
6 IL_8P9A_4188P9A0.28471Isolated non-canonical cWW pairsR SSU rRNAG868A869C870*G957U958U960ncWWcWW
7 IL_9H3G_1989H3G0.28641h1 SSU rRNAG869A870C871*G958PSU959U961ncWWcWW
8 IL_8GLP_2368GLP0.28271S2 SSU rRNAG925A926C927*G1014U1015U1017ncWWcWW
9 IL_9H3G_2279H3G0.39862h1 SSU rRNAU1352A1353C1354*G1373G1374G1377cWWcWWcWW
10 IL_7LYF_0047LYF0.38691Isolated non-canonical cWW pairADengue virus SLAG70A71G72*C51G52C54cWWcWWcWW
11 IL_1MFQ_0031MFQ0.40130Isolated non-canonical cWW pairA SRP RNAU132A133U134*A163G164G165cWWncWWcWW
12 IL_3CUL_0083CUL0.33270Isolated non-canonical cWW pairCRNA (92-MER)C87A88G89*U57G58G59cWWncWWncWWa
13 IL_4RC0_0034RC00.31700ARNA (12-mer)U108||A||2_556A2M109||A||2_5562SG110||||2_556*C103G104||AA105||AcWWcWWcWW
14 IL_8P9A_4618P9A0.35410Isolated non-canonical cWW pairsR SSU rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
15 IL_3IVK_0023IVK0.35190Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
16 IL_3HHN_0043HHN0.31120Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productA102A103C104*G87G88U89cWWcWWcWW
17 IL_4RBY_0014RBY0.33820Isolated non-canonical cWW pairARNA (12-mer)U108||||2_556A109||||2_556G110||||2_556*C1032SG104A105cWWcWWcWW
18 IL_4RBZ_0024RBZ0.31650Isolated non-canonical cWW pairARNA (12-mer)U108||A||2_656A109||A||2_656G110||||2_656*C103G104A2M105cWWcWWcWW
19 IL_8PFQ_0038PFQ0.30160Isolated non-canonical cWW pairB+AChains: A,BC23G24A25*U8A9G10cWWcWWcWW
20 IL_5DO5_0035DO50.30460Isolated non-canonical cWW pairARNA (12-mer)U108||A||2_556AF2109||A||2_5562SG110||||2_556*C103G104A105cWWcWWcWW
21 IL_8P9A_2968P9A0.31500Isolated non-canonical cWW pairAR LSU rRNAG1786A1787C1788*G1661G1662C1663cWWcWWcWW
22 IL_2R8S_0012R8S0.30750Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAING110G111G112*C208A210C211cWWcWWcWW
23 IL_7QUA_0037QUA0.35600Isolated non-canonical cWW pairARNA (12-mer)C1003G1004XMP1005*U1008||||2_656A1009||||2_656G1010||||2_656cWWcWWcWWa
24 IL_8D29_0018D290.32220Isolated non-canonical cWW pairCRNA (34-MER)G4A5U6*A29G30C31cWWcWWncWW
25 IL_4M4O_0024M4O0.27620Isolated non-canonical cWW pairBRNA (59-MER)G46A47C48*G12G13C14cWWcWWcWW
26 IL_9M86_0059M860.30350DRNA (31-MER)G69A70C71*G52G53C54cWWcWWcWW
27 IL_8OI5_0708OI50.29570Isolated non-canonical cWW pair (H)1 LSU rRNAG1782A1783C1784*G1657G1658C1659cWWcWWcWW
28 IL_9AXU_0649AXU0.30390Isolated non-canonical cWW pair (H)2 LSU rRNAG1827A1828C1829*G1696G1697C1698cWWcWWcWW
29 IL_8P9A_3548P9A0.33050Isolated non-canonical cWW pairAR LSU rRNAC3233A3234C3235*G3252G3253G3254cWWcWWcWW
30 IL_9H3G_0489H3G0.32470A LSU rRNAU1049A1050U1051*A1020G1021A1022cWWcWWcWW
31 IL_8P9A_2708P9A0.32300Isolated non-canonical cWW pairAR LSU rRNAU1039A1040U1041*A1009G1010A1011cWWcWWcWW
32 IL_8OI5_0458OI50.36240Isolated non-canonical cWW pair (H)1 LSU rRNAU1035A1036U1037*A1005G1006A1007cWWcWWcWW
33 IL_8GLP_2348GLP0.30590S2 SSU rRNAG907A908G909*C877G878C879cWWcWWcWW
34 IL_4LFB_0064LFB0.37450Isolated non-canonical cWW pairA SSU rRNAC67G68G69*C99A101G102cWWcWWcWW
35 IL_8B0X_0608B0X0.32530Isolated non-canonical cWW pair (H)A SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
36 IL_4LFB_0594LFB0.36900Isolated non-canonical cWW pairA SSU rRNAC1412A1413U1414*G1486G1487G1488cWWcWWcWW
37 IL_9H3G_0229H3G0.32430A LSU rRNAA459A460C461*G472G473U474cWWcWWcWW
38 IL_8CRE_4568CRE0.37120Isolated non-canonical cWW pairCM SSU rRNAC1308G1309A1310*U1275G1276G1277cWWcWW
39 IL_9H3G_2379H3G0.28000h1 SSU rRNAU1652A1653C1654*G1752A1753A2M1754cWWcWwcWW
40 IL_8P9A_4568P9A0.28680Isolated non-canonical cWW pairsR SSU rRNAU1650A1651C1652*G1748A1749A1750cWWcWwcWW
41 IL_8GLP_1738GLP0.29520L5 LSU rRNAC5057A5058C5059*G4992G4993G4994cWWcWWcWW
42 IL_5UNE_0075UNE0.29740Isolated non-canonical cWW pairA+BRNA (47-MER)G31G32C33*G12G13C14cWWncWW
43 IL_5UNE_0035UNE0.27260Isolated non-canonical cWW pairB+ARNA (47-MER)G31G32C33*G12G13C14cWWcWW
44 IL_8K85_0068K850.32980Isolated non-canonical cWW pairB+ARNA (56-MER)G26A27U28*A23A24C25cWWcWwcWW
45 IL_8K85_0078K850.27740Isolated non-canonical cWW pairA+BRNA (56-MER)G26A27U28*A23A24C25cWWcWwcWW
46 IL_9H3G_0789H3G0.30720A LSU rRNAG1675A1676A1677*U1691G1692U1693cWWcWWcWW
47 IL_8PFQ_0018PFQ0.29020Isolated non-canonical cWW pairA+BChains: A,BC3G4A5*U28A29G30cWWcWWcWW
48 IL_3D0U_0063D0U0.29500Isolated non-canonical cWW pairALysine riboswitchG112G113G114*C134A135C136cWWcWWcWW
49 IL_3DIL_0063DIL0.30950Isolated non-canonical cWW pairALysine riboswitchG115G116G117*C137A138C139cWWcWWcWW
50 IL_8OI5_1408OI50.32751Isolated non-canonical cWW pair3 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
51 IL_8P9A_3708P9A0.32671Isolated non-canonical cWW pairAS 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
52 IL_8QYX_1718QYX0.30951Isolated non-canonical cWW pair (H)B2 5S rRNAC92G93C94*G82A83G85cWWcWWcWW
53 IL_9AXU_1309AXU0.31331Isolated non-canonical cWW pair (H)3 5S rRNAA92A93C94*G82G83U85cWWcWWcWW
54 IL_5MSF_0015MSF0.28191Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
55 IL_4M6D_0114M6D0.32130Isolated non-canonical cWW pairHaptamerG46A47C48*G12G13C14ncWWcWWcWW
56 IL_4P3U_0014P3U0.34760Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
57 IL_4V83_2354V830.32160Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAG6173U6174G6175*C6153U6154C6155cWWncwWcWW
58 IL_7VYX_0017VYX0.25600Isolated non-canonical cWW pairCsgRNAG11A12C13*G53C54C55cWWncWWancWW
59 IL_8GLP_2178GLP0.26580S2 SSU rRNAG547C548C549*G535A536C537ncWWcWWacWW
60 IL_8GLP_3218GLP0.30050Isolated non-canonical cWW pair (H)S2 SSU rRNAPSU34C35PSU36*A519A520A521cWWcWWcWW
61 IL_7A0S_0427A0S0.31350Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
62 IL_4V9F_0234V9F0.25380Isolated non-canonical cWW pair0 LSU rRNAC899U900G901*C763C764G765cWWcWWcWW
63 IL_8OI5_0088OI50.25100Isolated non-canonical cWW pair (H)1 LSU rRNAC124U125G126*C140C141G142cWWcWWcWW
64 IL_8P9A_2378P9A0.26290Isolated non-canonical cWW pairAR LSU rRNAC125U126G127*C141C142G143cWWcWWcWW
65 IL_8OI5_0478OI50.25340Isolated non-canonical cWW pair (H)1 LSU rRNAG1083U1084G1085*C1065U1066U1067cWWncWwcWW
66 IL_8P9A_2728P9A0.29780Isolated non-canonical cWW pairAR LSU rRNAG1087U1088G1089*C1069U1070U1071cWWncWwcWW
67 IL_8OI5_0298OI50.25730Isolated non-canonical cWW pair (H)1 LSU rRNAC934U935G936*C799C800G801cWWcWWcWW
68 IL_9H3G_0339H3G0.23450A LSU rRNAC947U948G949*C812C813OMG814cWWcWWcWW
69 IL_8GLP_2898GLP0.23230Isolated non-canonical cWW pair (H)L5 LSU rRNAC1655U1656G1657*C1520C1521OMG1522cWWcWWcWW
70 IL_9AXU_0259AXU0.23100Isolated non-canonical cWW pair (H)2 LSU rRNAC970U971G972*C835C836G837cWWcWWcWW
71 IL_8P9A_2558P9A0.25740Isolated non-canonical cWW pairAR LSU rRNAC938U939G940*C803C804G805cWWcWWcWW
72 IL_7A0S_0147A0S0.21070Isolated non-canonical cWW pairX LSU rRNAC819U820A821*U685C686G687cWWcWWcWW
73 IL_4WF9_0204WF90.21290Isolated non-canonical cWW pairX LSU rRNAC851U852G853*C717C718G719cWWcWWcWW
74 IL_8B0X_0798B0X0.23940a LSU rRNAC808U809G810*C674C675G676cWWcWWcWW
75 IL_9DFE_0159DFE0.22150Isolated non-canonical cWW pair1A LSU rRNAC806U807G808*C672C673G674cWWcWWcWW
76 IL_7A0S_0207A0S0.22740Isolated non-canonical cWW pairX LSU rRNAG767U768C769*G754C755C756cWWcWWcWW
77 IL_8P9A_2498P9A0.23760Isolated non-canonical cWW pairAR LSU rRNAG792C793U794*G668U669C670cWWcWWcWW
78 IL_8OI5_0238OI50.23500Isolated non-canonical cWW pair (H)1 LSU rRNAG788C789U790*G666U667C668cWWcWWcWW
79 IL_8OI5_0498OI50.28400Isolated non-canonical cWW pair (H)1 LSU rRNAA1116U1117U1118*A1132C1133U1134cWWcWWcWW
80 IL_8P9A_2748P9A0.31760Isolated non-canonical cWW pairAR LSU rRNAA1120U1121U1122*A1136C1137U1138cWWcWWcWW
81 IL_9H3G_0529H3G0.33190A LSU rRNAA1129U1130PSU1131*A1145C1146U1147cWWcWWcWW
82 IL_3RW6_0043RW60.30250Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC33U34G35*C24C25G26cWWcWWcWW
83 IL_4V9F_0174V9F0.23840Isolated non-canonical cWW pair0 LSU rRNAC558U559U560*A597C598G599cWWcWWcWW
84 IL_4LFB_0104LFB0.25650Isolated non-canonical cWW pairA SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
85 IL_9H3G_0279H3G0.26400A LSU rRNAA680U681G682*C801C802OMU803cWWcWWcWW
86 IL_4LFB_0634LFB0.28780Isolated non-canonical cWW pairA SSU rRNAG1464C1465C1466*G1435U1436C1437cWWcWWcWW
87 IL_7ECP_0047ECP0.22190C+DRNA (12-mer)G8U9C10*G3C4C5cWWcWWcWW
88 IL_5D0B_0015D0B0.23840Isolated non-canonical cWW pairFRNA (17-mer)A37A38U39*A31C32U33cWWcWWcWW
89 IL_9TM6_0019TM60.19610R31-mer RNA hairpin with 5'pppG-C blunt end mimicking the influenza A virus vRNA promoter (panhandle)A7A8C9*G23C24U25cWWcWWcWW
90 IL_9H3G_0239H3G0.18390A LSU rRNAG497A498C499*G627C628C629cWWcWWcWW
91 IL_9TEL_0029TEL0.21570Y+XRNA (10-mer)A7A8C9*G2C3U4||AcWWcWWcWW
92 IL_7A0S_0267A0S0.22380Isolated non-canonical cWW pairX LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
93 IL_9H3G_1179H3G0.28510A LSU rRNAG2823C2824PSU2825*G2862A2863PSU2864cWWcWWacWW
94 IL_8P9A_3308P9A0.28440Isolated non-canonical cWW pairAR LSU rRNAG2824C2825U2826*G2863A2864U2865cWWcWWacWW
95 IL_9AXU_1059AXU0.28040Isolated non-canonical cWW pair (H)2 LSU rRNAG3013A3014U3015*A3021C3022C3023cWWncWWcWW
96 IL_4M4O_0014M4O0.28620Isolated non-canonical cWW pairBRNA (59-MER)A52C53G54*C6A7U8cWWcWWacWW
97 IL_9H3G_0079H3G0.20920A+3 LSU rRNAG1C2G3*C160A161C162cWWcWWacWW
98 IL_9H3G_2139H3G0.28500h1 SSU rRNAG1467C1468G1469*C1174C1175PSU1176cWWncBWcWW
99 IL_8P9A_4328P9A0.27880Isolated non-canonical cWW pairsR SSU rRNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
100 IL_8CRE_4468CRE0.32020Isolated non-canonical cWW pairCM SSU rRNAG1450C1451G1452*C1158C1159U1160cWWncBWcWW
101 IL_1RPU_0011RPU0.20580Isolated non-canonical cWW pairD+CRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncBWcWW
102 IL_8P9A_3408P9A0.20120Isolated non-canonical cWW pairAR LSU rRNAG2918A2919U2920*A2926C2927C2928cWWcWWcWW
103 IL_8OI5_1128OI50.21990Isolated non-canonical cWW pair (H)1 LSU rRNAG2890A2891U2892*A2898C2899C2900cWWcWWcWW
104 IL_8GLP_1528GLP0.21390L5 LSU rRNAG4495A4496U4497*A4503C4504C4505cWWcWWcWW
105 IL_9H3G_1259H3G0.21770A LSU rRNAG2917A2918U2919*A2925C2926C2927cWWcWWcWW
106 IL_4PDQ_0044PDQ0.20190Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
107 IL_4V9K_0644V9K0.21690Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
108 IL_9E6Q_0969E6Q0.163001 LSU rRNAU2799A2800G2801*C2836C2837A2838cWWcWWcWW
109 IL_8P9A_4348P9A0.21020Isolated non-canonical cWW pairsR SSU rRNAG1213U1214C1215*G1448U1449U1450ncWWncWwcWW
110 IL_1Z79_0011Z790.13920Isolated non-canonical cWW pairA+BRNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'A10A11U12*A5A5M6U7cWWcWWcWW
111 IL_1Z7F_0051Z7F0.15770Isolated non-canonical cWW pairC+BRNA (16-mer)A26A27U28*A5C6U7cWWcWWcWW
112 IL_8AF0_0018AF00.17730Isolated non-canonical cWW pairD+CRNA (19-mer)A37C38G39*C31C32U33cWWcWW
113 IL_7MLW_0017MLW0.18810Isolated non-canonical cWW pairFGuanidine-I riboswitchU4C5G6*C57A58A59cWWcWWacWW
114 IL_9H3G_0609H3G0.16980A LSU rRNAU1224C1225G1226*C1299A1300A1301cWWncWWacWW
115 IL_4YHW_0024YHW0.17720Isolated non-canonical cWW pairD+FU4 snRNA fragment + U6 snRNA fragmentA11C12G13*C68C69U70cWWcWW
116 IL_8OI5_1108OI50.141801 LSU rRNAC2861A2862U2863*G2884C2885G2886cWWncWWacWW
117 IL_8P9A_3378P9A0.15180Isolated non-canonical cWW pairAR LSU rRNAC2889A2890U2891*G2912C2913G2914cWWncWWacWW
118 IL_8GLP_1498GLP0.16260L5 LSU rRNAC4466A4467U4468*G4489C4490G4491cWWncWWacWW
119 IL_9AXU_1019AXU0.169102 LSU rRNAC2984A2985U2986*G3007C3008G3009cWWncWWacWW
120 IL_4AOB_0054AOB0.21890Isolated non-canonical cWW pairA SAM-I riboswitchC78G79U80*G71A72G73cWWncWWcWW
121 IL_8GLP_1978GLP0.22470S2 SSU rRNAA349C350G351*U110A111U112cWWcWWacWW
122 IL_6IA2_0046IA20.12200Isolated non-canonical cWW pairA+BRNA (19-mer)G11A12G13*C7C8C9cWWcWWcWW
123 IL_5MWI_0035MWI0.14270Isolated non-canonical cWW pairARNA G(CUG)8C duplexC8U9G10*C17||||4_555U18||||4_555G19||||4_555cWWcWW
124 IL_4E48_0054E480.14300Isolated non-canonical cWW pairB+ARNA (20-mer)C25U26G27*C14U15G16cWWcWW
125 IL_8GLP_2558GLP0.16330S2 SSU rRNAG1270C1271C1272*G1510U1511C1512cWWcWW
126 IL_6IA2_0026IA20.12520Isolated non-canonical cWW pairB+ARNA (19-mer)G11||AA12G13*C7C8C9cWWcWWcWW
127 IL_6IA2_0056IA20.10990Isolated non-canonical cWW pairB+ARNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
128 IL_7Y2P_0027Y2P0.19600Isolated non-canonical cWW pairB+ARNA (13-mer)C3U4G5*C9U10G11cWWcWW
129 IL_7Y2P_0017Y2P0.19960Isolated non-canonical cWW pairA+BRNA (13-mer)C3U4G5*C9U10G11cWWcWW
130 IL_7QQP_0087QQP0.19440Isolated non-canonical cWW pairA+C tracrRNA + AAVS1 off-target3 target strandA14C15A16*DT5DC6DT7cWWncBWcWW
131 IL_8CRE_4488CRE0.19630Isolated non-canonical cWW pairCM SSU rRNAG1198U1199C1200*G1434U1435U1436ncWWncWwcWW
132 IL_3SZX_0033SZX0.13590Isolated non-canonical cWW pairB+ARNA (19-mer)C7U8G9*C13U14G15cWWncWwcWW
133 IL_8OI5_1218OI50.15190Isolated non-canonical cWW pair (H)1 LSU rRNAC3134A3135C3136*G3249C3250G3251cWWncWWacWW
134 IL_7KFN_0017KFN0.17820Isolated non-canonical cWW pairB+CGli1 8AZ 23mer RNA + Gli1 1W5 23mer RNAG14A15G16*C8C9C10cWWcWWcWW
135 IL_9OP3_0019OP30.20980C+DRNA 32mer Top Strand + RNA 32mer 2F Bottom StrandG14A15G16*C17C18C19cWWcWWcWW
136 IL_7A0S_0317A0S0.20830Isolated non-canonical cWW pairX LSU rRNAU974C975C976*G963A964G965cWWcWWcWW
137 IL_9DFE_0339DFE0.19070Isolated non-canonical cWW pair1A LSU rRNAU963C964C965*G952A953G954cWWcWWcWW
138 IL_9H3G_2159H3G0.16920h1 SSU rRNAG1214PSU1215OMC1216*G1451U1452U1453cWWncWwcWW
139 IL_1G2J_0011G2J0.19080Isolated non-canonical cWW pairARNA (8-mer)C3||||12_565PYY4||||12_565G5||||12_565*C3PYY4G5cWWcWW
140 IL_7ECO_0057ECO0.18310Isolated non-canonical cWW pairE+FRNA (12-mer)G3U4C5*G8U9C10cWWcWW
141 IL_4KNQ_0034KNQ0.18960Isolated non-canonical cWW pairBRNA (20-mer)C210C211G212*C210||||4_555C211||||4_555G212||||4_555cWWcWW
142 IL_4JGN_0034JGN0.17930Isolated non-canonical cWW pairERNA (20-mer)C511U512G513*C511||||4_555U512||||4_555G513||||4_555cWWncWwcWW
143 IL_4J39_0014J390.19600Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
144 IL_1ZH5_0011ZH50.17490Isolated non-canonical cWW pairD+CRNA (9-mer)C3U4G5*C3U4G5cWWncWwcWW
145 IL_5AY2_0035AY20.17500Isolated non-canonical cWW pairB+ARNA (12-mer)A3C4U5*A8C9U10cWWcWW
146 IL_5AY2_0015AY20.18740Isolated non-canonical cWW pairA+BRNA (12-mer)A3C4U5*A8C9U10cWWcWW
147 IL_9H3G_1059H3G0.13650A LSU rRNAC2599A2600G2601*C2425C2426G2427cWWncWWacWW
148 IL_7ECO_0067ECO0.17740Isolated non-canonical cWW pairF+ERNA (12-mer)G3U4C5*G8U9C10cWWcWW
149 IL_9H3G_1379H3G0.12240A LSU rRNAU3190C3191U3192*G3182A3183G3184ncWWncWWncWWa
150 IL_7OG0_0017OG00.12840Isolated non-canonical cWW pairE+DRNA (19-mer)C9||||2_376C10||||2_376G11||||2_376*C9C10G11cWWcWW
151 IL_8GLP_2338GLP0.13930S2 SSU rRNAG874A875C876*G910C911C912cWWcWWcWW
152 IL_5AOX_0015AOX0.17280Isolated non-canonical cWW pairCALU JO CONSENSUS RNAC18A19C20*G9C10G11cWWcWWcWW
153 IL_9AXU_0079AXU0.17620Isolated non-canonical cWW pair (H)2 LSU rRNAC125U126G127*C147C148G149cWWcWWcWW
154 IL_7ZLQ_0027ZLQ0.13400Isolated non-canonical cWW pairD+ERNA (13-mer)G5C6C7*G5C6C7cWWncBWcWW
155 IL_8P9A_3088P9A0.09300Isolated non-canonical cWW pairAR LSU rRNAA2106A2107C2108*G1940C1941U1942cWWcWWcWW
156 IL_8GLP_1098GLP0.07890Isolated non-canonical cWW pair (H)L5 LSU rRNAA3610A3611C3612*G2889C2890U2891cWWcWWcWW
157 IL_9AXU_0769AXU0.10340Isolated non-canonical cWW pair (H)2 LSU rRNAA2194A2195C2196*G1995C1996U1997cWWcWWcWW
158 IL_9H3G_0899H3G0.12080A LSU rRNAA2105A2106C2107*G1942C1943U1944cWWcWWcWW
159 IL_8OI5_0828OI50.10420Isolated non-canonical cWW pair (H)1 LSU rRNAA2084A2085C2086*G1936C1937U1938cWWcWWcWW
160 IL_6OL3_0026OL30.00000Isolated non-canonical cWW pairC VA RNAG53A54C55*G78C79C80cWWcWWcWW
161 IL_5Y85_0065Y850.11220Isolated non-canonical cWW pairC+DRNA (18-mer) + DNA/RNA (50-MER)G13A14C15*G4C5C6cWWcWWcWW
162 IL_1U9S_0071U9S0.14420Isolated non-canonical cWW pairA RNase P class AC191A192C193*G177C178G179cWWcWWcWW
163 IL_8CRE_4258CRE0.09280Isolated non-canonical cWW pairCM SSU rRNAA958A959C960*G622C623U624cWWcWWcWW
164 IL_8P9A_4068P9A0.09640Isolated non-canonical cWW pairsR SSU rRNAA973A974C975*G624C625U626cWWcWWcWW
165 IL_9H3G_1909H3G0.10290h1 SSU rRNAA974A2M975C976*G626C627U628cWWcWWcWW
166 IL_8GLP_2278GLP0.10820Isolated non-canonical cWW pair (H)S2 SSU rRNAA1030A2M1031C1032*G673C674U675cWWcWWcWW
167 IL_6IA2_0016IA20.14400Isolated non-canonical cWW pairA+BRNA (19-mer)G2A3G4*C16C17C18cWWcWWcWW
168 IL_2ZKO_0012ZKO0.14870Isolated non-canonical cWW pairC+DRNA (21-mer)U9U10A11*U9U10A11cWWcWW
169 IL_3GM7_0013GM70.13880Isolated non-canonical cWW pairG+HRNA (18-mer)C1U2G3*C16U17G18cWWcWW
170 IL_3GM7_0053GM70.15950Isolated non-canonical cWW pairH+GRNA (18-mer)C4U5G6*C13U14G15cWWcWW
171 IL_5MWI_0045MWI0.16290Isolated non-canonical cWW pairARNA G(CUG)8C duplexC11U12||AG13*C14||||4_555U15||A||4_555G16||||4_555cWWcWW
172 IL_4E48_0044E480.18230Isolated non-canonical cWW pairA+BRNA (20-mer)C11U12G13*C28U29G30cWWncWwcWW
173 IL_4E48_0014E480.18690Isolated non-canonical cWW pairB+ARNA (20-mer)C37U38G39*C2U3G4cWWcWW
174 IL_4E48_0024E480.16290Isolated non-canonical cWW pairA+BRNA (20-mer)C5U6G7*C34U35G36cWWcWW
175 IL_8GLP_2838GLP0.20100S2 SSU rRNAA1793C1794G1795*C1739C1740U1741cWWncBWcWW
176 IL_1UN6_0051UN60.19710Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC95U96G97*C79U80G81cWWncWwcWW
177 IL_5MWI_0025MWI0.14820Isolated non-canonical cWW pairARNA G(CUG)8C duplexC5U6G7*C20||||4_555U21||||4_555G22||||4_555cWWcWW
178 IL_5VCI_0025VCI0.13050Isolated non-canonical cWW pairA+BRNA (22-mer) + RNA (12-mer)C4U5G6*C7U8G9cWWncWwcWW
179 IL_4E48_0034E480.13880Isolated non-canonical cWW pairB+ARNA (20-mer)C31U32G33*C8U9G10cWWcWW
180 IL_3SZX_0013SZX0.16530Isolated non-canonical cWW pairB+ARNA (19-mer)C13U14G15*C7U8G9cWWcWW
181 IL_3GM7_0063GM70.12320Isolated non-canonical cWW pairH+GRNA (18-mer)C1U2G3*C16U17G18cWWncWwcWW
182 IL_3GM7_0033GM70.16330Isolated non-canonical cWW pairG+HRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
183 IL_1YZ9_0021YZ90.11820Isolated non-canonical cWW pairE+FRNA (11-mer)A4C5U6*A15C16U17cWWncBWcWW
184 IL_8GLP_0398GLP0.15410L5 LSU rRNAG740C741G742*C922C923C924cWWncBWcWW
185 IL_3GM7_0023GM70.14210Isolated non-canonical cWW pairH+GRNA (18-mer)C13U14G15*C4U5G6cWWcWW
186 IL_4E59_0014E590.13470Isolated non-canonical cWW pairA+BRNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncBWcWW
187 IL_4WF9_0424WF90.16020Isolated non-canonical cWW pairX LSU rRNAC1160A1161C1162*G1081C1082G1083cWWncWWcWW
188 IL_9E6Q_0369E6Q0.160301 LSU rRNAC970C971G972*C1043A1044G1045cWWncWWacWW
189 IL_4WF9_0834WF90.19220Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
190 IL_4V9F_1054V9F0.15040Isolated non-canonical cWW pair9 5S rRNAC72A73G74*C107C108G109cWWcWWcWW
191 IL_6M6R_0016M6R0.17580Isolated non-canonical cWW pairBRNA (8-mer)G2C3C4*G5||||7_555C6||||7_555C7||||7_555cWWcWW
192 IL_5Y7M_0075Y7M0.14940Isolated non-canonical cWW pairDRNA (52-MER)G37A38U39*A11C12C13cWWcWWcWW
193 IL_5CCB_0015CCB0.12540Isolated non-canonical cWW pairN tRNAA37A38U39*A31C32U33cWWcWWcWW
194 IL_3MEI_0023MEI0.12390Isolated non-canonical cWW pairA+BRNA (23-mer)G8C9C10*G13C14C15cWWncBWcWW
195 IL_3GM7_0043GM70.19340Isolated non-canonical cWW pairH+GRNA (18-mer)C7U8G9*C10U11G12cWWncWwcWW
196 IL_9AXU_0429AXU0.23480Isolated non-canonical cWW pair (H)2 LSU rRNAC1101U1102U1103*G1119U1120G1121cWWncWwcWW
197 IL_4E48_0064E480.19170Isolated non-canonical cWW pairA+BRNA (20-mer)C17U18G19*C22U23G24cWWncWwcWW
198 IL_4KNQ_0024KNQ0.18260Isolated non-canonical cWW pairBRNA (20-mer)C213||||4_555C214||||4_555G215||||4_555*C207C208G209cWWcWW
199 IL_4JGN_0024JGN0.11860Isolated non-canonical cWW pairERNA (20-mer)C514||||4_555U515||||4_555G516||||4_555*C508U509G510cWWncWwcWW
200 IL_9AXU_0209AXU0.18250Isolated non-canonical cWW pair (H)2 LSU rRNAA693U694C695*G824C825U826cWWcWWcWW
201 IL_9AXU_0449AXU0.22950Isolated non-canonical cWW pair (H)2 LSU rRNAA1151U1152U1153*A1167C1168U1169cWWcWWcWW
202 IL_4ZC7_0014ZC70.21820Isolated non-canonical cWW pairA+BRNA duplexG5U6C7*G42U43C44cWWncwWcWW
203 IL_8P9A_4548P9A0.26580Isolated non-canonical cWW pairsR SSU rRNAG1642U1643C1644*G1757U1758C1759cWWcWW
204 IL_9H3G_2359H3G0.21470h1 SSU rRNAG1644U1645C1646*G1761U1762C1763cWWcWW
205 IL_8B0X_1778B0X0.19650Isolated non-canonical cWW pair (H)A SSU rRNAG1405U14065MC1407*G1494U1495C1496cWWcWW
206 IL_8GLP_2768GLP0.19800S2 SSU rRNAG1706U1707C1708*G1826U1827C1828cWWcWW
207 IL_8CRE_4688CRE0.21680Isolated non-canonical cWW pairCM SSU rRNAG1629U1630C1631*G1744U1745C1746cWWcWW
208 IL_4LFB_0694LFB0.25030Isolated non-canonical cWW pairA SSU rRNAG1405U14065MC1407*G1494U1495C1496cWWncWwcWW
209 IL_4PDQ_0014PDQ0.27940Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
210 IL_4ZC7_0044ZC70.23300Isolated non-canonical cWW pairB+ARNA duplexG28U29C30*G19U20C21cWWncwWcWW
211 IL_8P9A_3748P9A0.27550Isolated non-canonical cWW pairsR SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
212 IL_9H3G_1569H3G0.27020h1 SSU rRNAA473U474A475*U35C36U37cWWcWWcWW
213 IL_8CRE_3918CRE0.20000Isolated non-canonical cWW pairCM SSU rRNAA469U470A471*U35C36U37cWWcWWcWW
214 IL_1ZZ5_0021ZZ50.26020Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
215 IL_7KJT_0017KJT0.27580Isolated non-canonical cWW pairA tRNAG2C3C4*G69C70C71cWWncWW
216 IL_8B0X_0938B0X0.33990Isolated non-canonical cWW pair (H)a LSU rRNAA907U908G909*U872U873U874cWWcWwcWW
217 IL_8GLP_0308GLP0.26040L5 LSU rRNAC655C656C657*G497C498G499cWWcWW
218 IL_9H3G_1889H3G0.31740h1 SSU rRNAC616A617G618*C1106C1107G1108cWWcWWcWW
219 IL_8GLP_2258GLP0.30390S2 SSU rRNAC663A664G665*C1162C1163G1164cWWcWWcWW
220 IL_1Y27_0011Y270.26460Isolated non-canonical cWW pairXPurine riboswitchC43A44A45*U25C26G27cWWcWWcWW
221 IL_8GLP_0038GLP0.22280L5+L8 LSU rRNA + 5.8S rRNAG16A17C18*G139C140C141cWWcWWcWW
222 IL_1Z7F_0061Z7F0.26850Isolated non-canonical cWW pairB+CRNA (16-mer)A10A11U12*A21C22U23cWWcWWcWW
223 IL_1Z79_0021Z790.26520Isolated non-canonical cWW pairB+ARNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'A10A11U12*A5A5M6U7cWWcWWcWW
224 IL_7ECK_0137ECK0.22450Isolated non-canonical cWW pairJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5cWWncWWacWW
225 IL_7ECK_0157ECK0.21600Isolated non-canonical cWW pairI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A8A9U10*A3C4U5ncWWncWWacWW
226 IL_7ECN_0017ECN0.23000Isolated non-canonical cWW pairB+ARNA (12-mer)G8A9C10*G3C4C5cWWcWW
227 IL_7ECN_0027ECN0.30710Isolated non-canonical cWW pairA+BRNA (12-mer)G8A9C10*G3C4C5cWWcWW
228 IL_5C5W_0025C5W0.23940Isolated non-canonical cWW pairARNA (19-mer)U9||AC10||AA11||A*U9||A||5_556C10||A||5_556A11||A||5_556cWWcWW
229 IL_9H3G_1349H3G0.29090A LSU rRNAG3269A3270G3271*C3160C3161C3162cWWncWWcWW
230 IL_5ED1_0025ED10.25610Isolated non-canonical cWW pairB+CRNA (23-mer)G13A14C15*G9A10C11cWWcWwcWW
231 IL_8GLP_0258GLP0.31080L5 LSU rRNAG462A463G464*C691A692C693cWWcwWcWW
232 IL_7VFT_0037VFT0.34360Isolated non-canonical cWW pairARNA (23-mer)C11A12G13*C11||||12_555A12||||12_555G13||||12_555cWWcWW
233 IL_4J50_0024J500.31400Isolated non-canonical cWW pairA+BRNA (19-mer)C10A11G12*C10A11G12cWWcWW
234 IL_8GLP_2788GLP0.32470Isolated non-canonical cWW pair (H)S2 SSU rRNAU1714A1715C1716*G1817A1818A1819cWWcWwcWW
235 IL_8CRE_4708CRE0.34000Isolated non-canonical cWW pairCM SSU rRNAU1637A1638C1639*G1735A1736A1737cWWncWwcWW
236 IL_8AF0_0048AF00.37330Isolated non-canonical cWW pairC+DRNA (19-mer)A37C38G39*C31C32U33ncWWcWW
237 IL_5UNE_0045UNE0.30030Isolated non-canonical cWW pairA+BRNA (47-MER)U16A17G18*C27A28G29cWWcWwcWW
238 IL_5ZTM_0015ZTM0.37090Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2U118A119G120*C162C163G164cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUG*CUG24
GUC*GUC12
CUG*CCG11
AAC*GCU9
GAC*GCC8
GAG*CCC7
GAC*GGC6
AAU*ACU6
GAU*ACC6
CCG*CCG5
CAG*CCG5
GCC*GCC5
ACG*CCU4
CAU*GCG4
CAC*GCG4
AAC*GGU3
GGG*CAC3
UAU*AGA3
UAC*GAA3
AUU*ACU3
ACU*ACU3
AUA*UCU3
GAC*GUUU2
CGA*UAG2
CAC*GGG2
CAU*GGG2
GGC*GGC2
GAU*AAC2
CAU*AGUG2
GUG*CUU2
CUG*CC(OMG)2
GUC*GCC2
GCU*GUC2
GCC*GUC2
GCG*CCU2
UCA*UCA2
GUC*GUU2
UCG*CAA2
UCC*GAG2
A(A2M)C*GCU2
GU(5MC)*GUC2
CAG*CAG2
CUGC*GAG1
CUAC*GAG1
CAC*GAGG1
UAC*GGA1
CAC*GAAG1
GAC*G(PSU)UU1
UAC*GGCCG1
GAG*CGAC1
UAU*AGG1
CAG*UGG1
U(A2M)(2SG)*CGA1
GGC*GAC1
UAG*C(2SG)A1
UAG*CG(A2M)1
U(AF2)(2SG)*CGA1
CG(XMP)*UAG1
GAU*AGC1
GAG*CGC1
CGG*CAG1
CGA*UGG1
UAC*GA(A2M)1
GAA*UGU1
CGC*GAUG1
AAC*GGUU1
CAC*GGAG1
GUG*CUC1
GCC*GAC1
(PSU)C(PSU)*AAA1
CUA*UCG1
AU(PSU)*ACU1
CUU*ACG1
CCC*GUG1
AUG*CC(OMU)1
CAU*ACG1
GC(PSU)*GA(PSU)1
GCU*GAU1
ACG*CAU1
GCG*CAC1
GCG*CC(PSU)1
UAG*CCA1
AAU*AU1
CGU*GAG1
ACG*UAU1
ACA*TCT1
G(PSU)(OMC)*GUU1
C(PYY)G*C(PYY)G1
UCU*GAG1
UUA*UUA1
GCG*CCC1
CCG*CAG1
CCU*AAG1
CUU*GUG1
AUC*GCU1
AUG*UUU1
CCC*GCG1
CAA*UCG1
AAU*A(A5M)U1
GAC*GAC1
GAG*CAC1
UAG*CAG1
UAG*CCG1
Non-Watson-Crick part of the motif
SequenceCounts
A*C53
U*U46
U*C26
C*C25
A*G23
C*A14
A*A11
G*A9
C*U5
G*G3
A*GU3
A*UU2
A*GA2
A*(A5M)2
(A2M)*C2
UG*A1
UA*A1
A*AG1
A*AA1
A*(PSU)U1
A*GCC1
(A2M)*G1
A*(2SG)1
(AF2)*G1
G*AU1
(PSU)*U1
(PYY)*(PYY)1

Release history

Release4.7
Date2026-02-25
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (158)
  • (52)
  • Isolated non-canonical cWW pair (H) (28)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.02 | Avg 0.31 | Max 0.69
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 9.0538 s