IL_1BYJ_070

3D structure

PDB id

1BYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

GENTAMICIN C1A A-SITE COMPLEX

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1BYJ_070 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2213

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

1BYJ|35|A|C|6
1BYJ|35|A|A|7
1BYJ|35|A|C|8
*
1BYJ|35|A|G|19
1BYJ|35|A|A|20
1BYJ|35|A|A|21
1BYJ|35|A|G|22

Current chains

Chain A

RNA (16S RNA)

Nearby chains